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6 – MPI Sample Applications
D000006-000 Rev A 6-3
Q
This will run assorted bandwidths from 4K to 4Mbytes. To run a different set of
message sizes an optional argument specifying the maximum message size can
be provided.
This benchmark will only use the first two nodes listed in mpi_hosts.
During this benchmark the /opt/iba/src/mpi_apps/mpi.param.pallas
config file is used.
6.4
OSU Bandwidth2
This is a simple benchmark of maximum unidirectional bandwidth.
A script is provided to run this application that will execute an assortment of sizes:
1. cd /opt/iba/src/mpi_apps
2. ./run_bw2
This will run assorted bandwidths from 1 byte to 4Mbytes. This benchmark will only
use the first two nodes listed in mpi_hosts.
During this benchmark the /opt/iba/src/mpi_apps/mpi.param.pallas
config file is used.
6.5
OSU Bidirectional Bandwidth
This is a simple benchmark of maximum bidirectional bandwidth..
A script is provided to run this application that will execute an assortment of sizes:
1. cd /opt/iba/src/mpi_apps
2. ./run_bibw2
This will run assorted bandwidths from 1 byte to 4Mbytes. This benchmark will only
use the first two nodes listed in mpi_hosts.
During this benchmark the /opt/iba/src/mpi_apps/mpi.param.pallas
config file is used.
6.6
High Performance Linpack (HPL)
This is a standard benchmark for Floating Point Linear Algebra performance.
Included in the HPL is the Dr K. Goto Linear Algebra library. If desired, the user
can modify the HPL makefiles to use alternate libraries. Atlas source code and
the open source math library is also provided in
/opt/iba/src/mpi_apps/ATLAS.
HPL is known to scale very well and is the benchmark of choice for identifying a
systems ranking in the Top 500 supercomputers (http://www.top500.org).
- Fast Fabric 1
- Users Guide 1
- Fast Fabric Users Guide 2
- Page ii D000006-000 Rev. A 2
- D000006-000 Rev. A Page iii 3
- Section 1 Introduction 5
- Section 3 Getting Started 5
- Page vi D000006-000 Rev. A 6
- D000006-000 Rev. A Page vii 7
- Page viii D000006-000 Rev. A 8
- Introduction 9
- Technical Support 10
- Availability 10
- Contact Information 10
- Fast Fabric Overview 11
- Fast Fabric Architecture 12
- How Fast Fabric Works 13
- 2 – Fast Fabric Overview 14
- 2-4 D000006-000 Rev A 14
- Getting Started 15
- Set Up the Fabric 16
- Using Fast Fabric 18
- 3 – Getting Started 20
- 3-6 D000006-000 Rev A 20
- 3-8 D000006-000 Rev A 22
- Chassis1 22
- Chassis2 22
- 3-12 D000006-000 Rev A 26
- [/etc/sysconfig/iba/ibnodes]: 26
- 3-14 D000006-000 Rev A 28
- D000006-000 Rev A 3-15 29
- D000006-000 Rev A 3-17 31
- Running HPL 34
- Upgrading IB software 35
- D000006-000 Rev A 3-23 37
- 3-24 D000006-000 Rev A 38
- Fast Fabric TUI Menu 39
- Host Setup via Fast Fabric 41
- Verify RSH/RCP Configured 42
- Setup Password-less SSH/SCP 43
- Copy /etc/hosts to all hosts 43
- Show uname -a for all hosts 43
- Configure IPoIB IP Address 44
- Reboot Hosts 44
- Refresh SSH Known Hosts 44
- Rebuild MPI Library and Tools 44
- Run a command on all hosts 45
- Copy a file to all hosts 45
- View ibtest result files 45
- Host Admin via Fast Fabric 46
- Summary of Fabric Components 47
- Show Status of Host IB Ports 47
- Verify Hosts see each other 47
- Verify Hosts ping via IPoIB 47
- Check MPI Performance 48
- Update Chassis Firmware 50
- Reboot Chassis 51
- Run a command on all chassis 51
- View ibtest results files 51
- Update Switch Firmware 52
- Reboot Switch 53
- 4 – Fast Fabric TUI Menu 54
- 4-16 D000006-000 Rev A 54
- Common Tool Options 55
- -n or -I 56
- Selection of Hosts 57
- Host List File Format 58
- Explicit host names 58
- Selection of Chassis 58
- Chassis List File Format 60
- Explicit Chassis names 60
- Selection of Switches 61
- Switch List File Format 62
- Explicit Switch names 63
- Port List File Format 64
- Explicit ports 65
- 5-14 D000006-000 Rev A 68
- D000006-000 Rev A 5-15 69
- D000006-000 Rev A 5-17 71
- 5-18 D000006-000 Rev A 72
- File Management Tools 73
- D000006-000 Rev A 5-21 75
- Fabric_info 79
- 5-28 D000006-000 Rev A 82
- D000006-000 Rev A 5-29 83
- 5-30 D000006-000 Rev A 84
- D000006-000 Rev A 5-31 85
- Basics of Using iba_report 87
- D000006-000 Rev A 5-39 93
- Topology Verification 94
- Focused Reports 94
- Advanced Focus 95
- Focus Examples: 96
- Scriptable output 96
- 5.4.3.4.1 97
- Sample Output 98
- 5.4.3.5.2 100
- D000006-000 Rev A 5-47 101
- Fabric Analysis Tools 102
- 5-48 D000006-000 Rev A 102
- D000006-000 Rev A 5-49 103
- 5-50 D000006-000 Rev A 104
- D000006-000 Rev A 5-51 105
- 5-52 D000006-000 Rev A 106
- D000006-000 Rev A 5-53 107
- 5-54 D000006-000 Rev A 108
- D000006-000 Rev A 5-55 109
- D000006-000 Rev A 5-57 111
- (-o) are permitted: 112
- Table 5-1. Input Combinations 112
- 5-62 D000006-000 Rev A 116
- D000006-000 Rev A 5-63 117
- 5-64 D000006-000 Rev A 118
- D000006-000 Rev A 5-65 119
- 5-66 D000006-000 Rev A 120
- D000006-000 Rev A 5-67 121
- Usage Model 123
- Common Operations and Options 124
- D000006-000 Rev A 5-71 125
- D000006-000 Rev A 5-73 127
- 5-74 D000006-000 Rev A 128
- D000006-000 Rev A 5-75 129
- D000006-000 Rev A 5-77 131
- 5-78 D000006-000 Rev A 132
- D000006-000 Rev A 5-79 133
- 5-80 D000006-000 Rev A 134
- D000006-000 Rev A 5-81 135
- hostsm_analysis 135
- 5-82 D000006-000 Rev A 136
- D000006-000 Rev A 5-83 137
- 'esmchassis'] 137
- 5-84 D000006-000 Rev A 138
- D000006-000 Rev A 5-85 139
- Manual and Automated Usage 141
- 5-88 D000006-000 Rev A 142
- MPI Sample Applications 143
- OSU Latency 144
- OSU Latency2 144
- OSU Bandwidth 144
- OSU Bandwidth2 145
- OSU Bidirectional Bandwidth 145
- 6 – MPI Sample Applications 146
- 6-4 D000006-000 Rev A 146
- ./config_hpl 146
- ./run_hpl 16 146
- D000006-000 Rev A 6-5 147
- ./run_pmb 4 147
- 6-6 D000006-000 Rev A 148
- Setup The Fabric 149
- A-2 D000006-000 Rev A 150
- D000006-000 Rev A A-3 151
- A-4 D000006-000 Rev A 152
- Appendix B 153
- D000006-000 Rev A B-7 159
- Host List Files 161
- Chassis List Files 161
- Switch List Files 163
- Port List Files 164
- D000006-000 Rev A B-13 165
- B-14 D000006-000 Rev A 166
- Appendix C 167
- C-2 D000006-000 Rev A 168
- Multi-Subnet Fabrics 169
- D – Multi-Subnet Fabrics 170
- Primarily Independent Subnets 170
- D-2 D000006-000 Rev A 170
- Overlapping Subnets 171
- D-4 D000006-000 Rev A 172
- D000006-000 Rev A D-5 173
- D-6 D000006-000 Rev A 174
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